Variant report

Variant	rs3850064
Chromosome Location	chr13:80523862-80523863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:80515452..80518382-chr13:80523025..80524926,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11838566	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11840618	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11840648	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11840740	0.81[ASN][1000 genomes]
rs11841357	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11843138	0.91[EUR][1000 genomes]
rs12323035	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12583025	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12583645	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12585712	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12853769	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12861375	0.81[ASN][1000 genomes]
rs12867413	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12868561	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12876835	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13378771	0.86[EUR][1000 genomes]
rs1811362	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1853995	0.89[ASN][1000 genomes]
rs2007276	0.88[EUR][1000 genomes]
rs2118798	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2304638	0.80[ASN][1000 genomes]
rs2329003	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2329144	0.92[ASN][1000 genomes]
rs2329147	0.83[ASN][1000 genomes]
rs2329148	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34622893	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35409297	0.88[ASN][1000 genomes]
rs36063327	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3843950	0.88[ASN][1000 genomes]
rs3850060	0.91[ASN][1000 genomes]
rs3850061	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3850062	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3861143	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3898550	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3898551	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4052505	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4290373	0.87[ASN][1000 genomes]
rs4306392	0.88[ASN][1000 genomes]
rs4514565	0.86[EUR][1000 genomes]
rs4533153	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4884141	0.88[EUR][1000 genomes]
rs4884142	0.89[EUR][1000 genomes]
rs4885683	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55978445	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57067871	0.89[EUR][1000 genomes]
rs6563146	0.84[EUR][1000 genomes]
rs6563150	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66994466	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7317135	0.84[ASN][1000 genomes]
rs7329042	0.89[EUR][1000 genomes]
rs7329614	0.89[EUR][1000 genomes]
rs7330635	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7332417	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7333212	0.84[EUR][1000 genomes]
rs7336725	0.83[ASN][1000 genomes]
rs7982819	0.83[ASN][1000 genomes]
rs7994328	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7997147	0.81[ASN][1000 genomes]
rs9318663	0.91[EUR][1000 genomes]
rs9545268	0.82[ASN][1000 genomes]
rs9545275	0.91[ASN][1000 genomes]
rs9545281	0.89[ASN][1000 genomes]
rs9574522	0.89[ASN][1000 genomes]
rs9593417	0.88[EUR][1000 genomes]
rs9593420	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9593421	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9601280	0.84[EUR][1000 genomes]
rs9601281	0.88[EUR][1000 genomes]
rs9601283	0.89[EUR][1000 genomes]
rs9601286	0.86[EUR][1000 genomes]
rs9601288	0.89[EUR][1000 genomes]
rs9601289	0.86[EUR][1000 genomes]
rs9601290	0.89[EUR][1000 genomes]
rs9601293	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9601294	0.83[ASN][1000 genomes]
rs9805460	0.82[EUR][1000 genomes]
rs996823	0.86[EUR][1000 genomes]
rs996824	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900591	chr13:80512487-80613204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900592	chr13:80512487-80715893	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80518000-80540400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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