Variant report

Variant	rs9545268
Chromosome Location	chr13:80501995-80501996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1006458	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11838566	0.81[ASN][1000 genomes]
rs11840740	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11841357	0.81[ASN][1000 genomes]
rs11843138	0.94[ASN][1000 genomes]
rs12323034	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12323035	0.89[ASN][1000 genomes]
rs12583025	0.98[ASN][1000 genomes]
rs12583645	0.98[ASN][1000 genomes]
rs12861375	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12867413	0.83[ASN][1000 genomes]
rs12868561	0.83[ASN][1000 genomes]
rs12876835	0.92[ASN][1000 genomes]
rs13378771	0.82[ASN][1000 genomes]
rs1811362	0.90[ASN][1000 genomes]
rs2007276	0.81[ASN][1000 genomes]
rs2118798	0.83[ASN][1000 genomes]
rs2304638	0.94[ASN][1000 genomes]
rs2329003	0.98[ASN][1000 genomes]
rs2329148	0.83[ASN][1000 genomes]
rs34710670	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36063327	0.97[ASN][1000 genomes]
rs3850060	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3850061	0.81[ASN][1000 genomes]
rs3850062	0.81[ASN][1000 genomes]
rs3850064	0.82[ASN][1000 genomes]
rs3861143	0.96[ASN][1000 genomes]
rs3861144	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3898550	0.82[ASN][1000 genomes]
rs3898551	0.82[ASN][1000 genomes]
rs3916021	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4052505	0.97[ASN][1000 genomes]
rs4533153	0.81[ASN][1000 genomes]
rs4884141	0.81[ASN][1000 genomes]
rs4885680	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4885681	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4885683	0.92[ASN][1000 genomes]
rs55978445	0.82[ASN][1000 genomes]
rs6563150	0.98[ASN][1000 genomes]
rs7318554	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7329042	0.81[ASN][1000 genomes]
rs7329614	0.81[ASN][1000 genomes]
rs7330635	0.82[ASN][1000 genomes]
rs7332417	0.97[ASN][1000 genomes]
rs7336725	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7982819	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7995887	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7997147	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9318660	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9318662	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9318663	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9545250	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9545261	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9565536	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9593417	0.81[ASN][1000 genomes]
rs9593418	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9593420	0.91[ASN][1000 genomes]
rs9593421	0.95[ASN][1000 genomes]
rs9601283	0.81[ASN][1000 genomes]
rs9601288	0.81[ASN][1000 genomes]
rs9601289	0.81[ASN][1000 genomes]
rs9601290	0.81[ASN][1000 genomes]
rs9601291	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9601293	0.97[ASN][1000 genomes]
rs9601294	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs996823	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv438256	chr13:80479404-80503110	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80493200-80504600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80498800-80510400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links