Variant report

Variant	rs3916021
Chromosome Location	chr13:80471293-80471294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1006458	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11840740	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11843138	0.83[ASN][1000 genomes]
rs12323034	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12323035	0.87[ASN][1000 genomes]
rs12583025	0.83[ASN][1000 genomes]
rs12583645	0.83[ASN][1000 genomes]
rs12861375	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12876835	0.88[ASN][1000 genomes]
rs13378771	0.83[ASN][1000 genomes]
rs1811362	0.88[ASN][1000 genomes]
rs2007276	0.83[ASN][1000 genomes]
rs2304638	0.82[ASN][1000 genomes]
rs2329003	0.84[ASN][1000 genomes]
rs34710670	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36063327	0.82[ASN][1000 genomes]
rs3850060	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3861143	0.85[ASN][1000 genomes]
rs3861144	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3898550	0.83[ASN][1000 genomes]
rs3898551	0.83[ASN][1000 genomes]
rs4052505	0.82[ASN][1000 genomes]
rs4533153	0.83[ASN][1000 genomes]
rs4884141	0.83[ASN][1000 genomes]
rs4884142	0.81[ASN][1000 genomes]
rs4885680	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4885681	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57067871	0.81[ASN][1000 genomes]
rs6563146	0.81[ASN][1000 genomes]
rs6563150	0.84[ASN][1000 genomes]
rs7318554	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7329042	0.83[ASN][1000 genomes]
rs7329614	0.83[ASN][1000 genomes]
rs7330635	0.83[ASN][1000 genomes]
rs7332417	0.82[ASN][1000 genomes]
rs7333212	0.81[ASN][1000 genomes]
rs7336725	0.83[ASN][1000 genomes]
rs7982819	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7995887	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7997147	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9318660	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9318662	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9318663	0.82[ASN][1000 genomes]
rs9545250	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9545261	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9545268	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9565536	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9593417	0.83[ASN][1000 genomes]
rs9593418	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9593420	0.88[ASN][1000 genomes]
rs9593421	0.84[ASN][1000 genomes]
rs9601281	0.80[ASN][1000 genomes]
rs9601283	0.82[ASN][1000 genomes]
rs9601286	0.81[ASN][1000 genomes]
rs9601288	0.83[ASN][1000 genomes]
rs9601289	0.83[ASN][1000 genomes]
rs9601290	0.83[ASN][1000 genomes]
rs9601291	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9601293	0.82[ASN][1000 genomes]
rs9601294	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs996823	0.83[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80449000-80472400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80470200-80471800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr13:80470600-80471800	Weak transcription	Psoas Muscle	Psoas

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