Variant report

Variant	rs12876835
Chromosome Location	chr13:80477779-80477780
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11838566	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11840618	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11840648	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11840740	0.94[ASN][1000 genomes]
rs11841357	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11843138	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12323034	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12323035	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12583025	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12583645	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12585712	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12853769	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12861375	0.95[ASN][1000 genomes]
rs12867413	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12868561	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13378771	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1811362	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2007276	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118798	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2304638	0.92[ASN][1000 genomes]
rs2329003	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2329148	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34622893	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34710670	0.84[ASN][1000 genomes]
rs36063327	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3850061	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3850062	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3850064	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3861143	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3861144	0.85[ASN][1000 genomes]
rs3898550	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3898551	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3916021	0.88[ASN][1000 genomes]
rs4052505	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4514565	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4533153	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4884141	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4884142	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4885681	0.80[ASN][1000 genomes]
rs4885683	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55978445	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57067871	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6563146	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6563150	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66994466	0.84[EUR][1000 genomes]
rs7318554	0.91[ASN][1000 genomes]
rs7329042	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7329614	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7330635	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7332417	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7333212	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7336725	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7982819	0.93[ASN][1000 genomes]
rs7994328	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7995887	0.92[ASN][1000 genomes]
rs7997147	0.95[ASN][1000 genomes]
rs9318660	0.86[ASN][1000 genomes]
rs9318662	0.87[ASN][1000 genomes]
rs9318663	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9545261	0.91[ASN][1000 genomes]
rs9545268	0.92[ASN][1000 genomes]
rs9565536	0.80[ASN][1000 genomes]
rs9593417	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9593418	0.86[ASN][1000 genomes]
rs9593419	0.85[EUR][1000 genomes]
rs9593420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9593421	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9601280	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9601281	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9601283	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9601285	0.86[EUR][1000 genomes]
rs9601286	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9601288	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9601289	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9601290	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9601291	0.92[ASN][1000 genomes]
rs9601293	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9601294	0.93[ASN][1000 genomes]
rs9805460	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs996823	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs996824	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12876835	FAM134C	trans	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80475800-80479000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:80476000-80479000	Weak transcription	Brain Anterior Caudate	brain
3	chr13:80476000-80479000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:80476000-80479000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr13:80476000-80479400	Weak transcription	Brain Angular Gyrus	brain
6	chr13:80476000-80484800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:80476200-80479000	Weak transcription	Brain Hippocampus Middle	brain
8	chr13:80477200-80479200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr13:80477400-80479000	Weak transcription	NHDF-Ad	bronchial
10	chr13:80477600-80479000	Weak transcription	Brain Substantia Nigra	brain

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