Variant report

Variant	rs12867413
Chromosome Location	chr13:80549319-80549320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10507901	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11838566	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11840618	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11840648	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11840740	0.82[ASN][1000 genomes]
rs11841357	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11843138	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12323035	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12583025	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12583645	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12585712	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12853769	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12861375	0.81[ASN][1000 genomes]
rs12868561	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12876835	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13378771	0.81[AMR][1000 genomes]
rs1811362	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1853995	0.87[ASN][1000 genomes]
rs2007276	0.81[EUR][1000 genomes]
rs2118798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329003	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2329144	0.86[ASN][1000 genomes]
rs2329147	0.88[ASN][1000 genomes]
rs2329148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34622893	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35409297	0.89[ASN][1000 genomes]
rs36063327	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3843950	0.91[ASN][1000 genomes]
rs3850060	0.85[ASN][1000 genomes]
rs3850061	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3850062	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3850064	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3861143	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3861146	0.80[ASN][1000 genomes]
rs3898550	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3898551	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3966634	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4052505	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4290373	0.94[ASN][1000 genomes]
rs4306392	0.91[ASN][1000 genomes]
rs4533153	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4884141	0.81[EUR][1000 genomes]
rs4884142	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4885683	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55978445	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57067871	0.82[EUR][1000 genomes]
rs6563150	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66994466	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7317135	0.84[ASN][1000 genomes]
rs7329042	0.82[EUR][1000 genomes]
rs7329614	0.82[EUR][1000 genomes]
rs7330635	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7332417	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7336725	0.83[ASN][1000 genomes]
rs7982819	0.83[ASN][1000 genomes]
rs7994328	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7997147	0.81[ASN][1000 genomes]
rs9318663	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9545268	0.83[ASN][1000 genomes]
rs9545275	0.85[ASN][1000 genomes]
rs9545281	0.89[ASN][1000 genomes]
rs9574522	0.89[ASN][1000 genomes]
rs9593417	0.81[EUR][1000 genomes]
rs9593420	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9593421	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9601281	0.81[EUR][1000 genomes]
rs9601283	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9601288	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9601290	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9601293	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9601294	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900591	chr13:80512487-80613204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900592	chr13:80512487-80715893	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80547000-80555800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80548400-80549800	Weak transcription	Gastric	stomach
3	chr13:80548600-80549600	Enhancers	Esophagus	oesophagus
4	chr13:80549000-80550000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr13:80549200-80549600	Enhancers	A549	lung
6	chr13:80549200-80549800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:80549200-80550000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:80549200-80550000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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