Variant report
| Variant | rs9601285 |
|---|---|
| Chromosome Location | chr13:80465617-80465618 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs11843138 | 0.86[EUR][1000 genomes] |
| rs12323035 | 0.86[EUR][1000 genomes] |
| rs12583025 | 0.86[EUR][1000 genomes] |
| rs12583645 | 0.86[EUR][1000 genomes] |
| rs12876835 | 0.86[EUR][1000 genomes] |
| rs13378771 | 0.85[EUR][1000 genomes] |
| rs1811362 | 0.86[EUR][1000 genomes] |
| rs2007276 | 0.86[EUR][1000 genomes] |
| rs2329003 | 0.84[EUR][1000 genomes] |
| rs36063327 | 0.86[EUR][1000 genomes] |
| rs3861143 | 0.84[EUR][1000 genomes] |
| rs3898550 | 0.87[EUR][1000 genomes] |
| rs3898551 | 0.87[EUR][1000 genomes] |
| rs4052505 | 0.84[EUR][1000 genomes] |
| rs4514565 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4533153 | 0.88[EUR][1000 genomes] |
| rs4884141 | 0.86[EUR][1000 genomes] |
| rs4884142 | 0.87[EUR][1000 genomes] |
| rs4885683 | 0.84[EUR][1000 genomes] |
| rs57067871 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6563146 | 0.84[EUR][1000 genomes] |
| rs6563150 | 0.82[EUR][1000 genomes] |
| rs7329042 | 0.87[EUR][1000 genomes] |
| rs7329614 | 0.87[EUR][1000 genomes] |
| rs7330635 | 0.87[EUR][1000 genomes] |
| rs7332417 | 0.85[EUR][1000 genomes] |
| rs7333212 | 0.84[EUR][1000 genomes] |
| rs9318663 | 0.85[EUR][1000 genomes] |
| rs9593417 | 0.86[EUR][1000 genomes] |
| rs9593419 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9593420 | 0.86[EUR][1000 genomes] |
| rs9593421 | 0.86[EUR][1000 genomes] |
| rs9601280 | 0.83[EUR][1000 genomes] |
| rs9601281 | 0.88[EUR][1000 genomes] |
| rs9601283 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9601286 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9601288 | 0.87[EUR][1000 genomes] |
| rs9601289 | 0.84[EUR][1000 genomes] |
| rs9601290 | 0.87[EUR][1000 genomes] |
| rs9601293 | 0.86[EUR][1000 genomes] |
| rs9805460 | 0.85[EUR][1000 genomes] |
| rs996823 | 0.85[EUR][1000 genomes] |
| rs996824 | 0.83[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:80449000-80472400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
