Variant report
| Variant | rs10076584 |
|---|---|
| Chromosome Location | chr5:41222786-41222787 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10074213 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10512765 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16870999 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16871009 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16871031 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16900139 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3805718 | 1.00[CHB][hapmap] |
| rs55944224 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56080361 | 0.95[EUR][1000 genomes] |
| rs59735840 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61733159 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6861707 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6881203 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6889037 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73074048 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73074049 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73074097 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73074102 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73075915 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73753103 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73753126 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73753136 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7708625 | 1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7717903 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7728302 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427717 | chr5:41201377-41369202 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv4808 | chr5:41203254-41251985 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv830269 | chr5:41209113-41393536 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:41219600-41223600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
