Variant report

Variant	rs6889037
Chromosome Location	chr5:41220623-41220624
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10074213	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076584	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871031	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805718	1.00[CHB][hapmap]
rs55944224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56080361	0.95[EUR][1000 genomes]
rs59735840	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61733159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881203	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753136	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41219200-41221000	Enhancers	Brain Substantia Nigra	brain
2	chr5:41219600-41221000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:41219600-41223600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:41219800-41220800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:41220200-41221000	Enhancers	Pancreatic Islets	Pancreatic Islet

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