Variant report

Variant	rs73753136
Chromosome Location	chr5:41213072-41213073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10074213	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076584	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512765	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870999	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871031	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900139	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55944224	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56080361	0.90[EUR][1000 genomes]
rs59735840	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61733159	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861707	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881203	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889037	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074048	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074049	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074097	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074102	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075915	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753103	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753126	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708625	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717903	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728302	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41209800-41213800	Active TSS	Liver	Liver
2	chr5:41211400-41213800	Active TSS	Right Atrium	heart
3	chr5:41211600-41213600	Active TSS	Fetal Intestine Small	intestine
4	chr5:41211600-41213600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr5:41212000-41213600	Active TSS	Fetal Intestine Large	intestine
6	chr5:41212400-41213200	Active TSS	Pancreas	Pancrea
7	chr5:41212800-41213600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:41212800-41213600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:41212800-41213600	Active TSS	Right Ventricle	heart
10	chr5:41212800-41215200	Enhancers	HepG2	liver
11	chr5:41213000-41213600	Enhancers	Stomach Mucosa	stomach
12	chr5:41213000-41213800	Enhancers	Sigmoid Colon	Sigmoid Colon

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