Variant report

Variant	rs73074097
Chromosome Location	chr5:41240576-41240577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10074213	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076584	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512765	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870999	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871009	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871031	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900139	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55944224	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56080361	0.95[EUR][1000 genomes]
rs59735840	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61733159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881203	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074049	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753126	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753136	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708625	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717903	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728302	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3470448	chr5:41226641-41244101	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv499625	chr5:41226813-41243968	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3470449	chr5:41226814-41243968	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv516193	chr5:41229277-41241610	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv597879	chr5:41229277-41253853	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv441950	chr5:41231498-41241393	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41239000-41248000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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