Variant report
| Variant | rs10082059 |
|---|---|
| Chromosome Location | chr1:197837683-197837684 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:197828498..197830779-chr1:197836162..197838765,2 | K562 | blood: | |
| 2 | chr1:197583975..197584970-chr1:197837652..197838487,2 | MCF-7 | breast: | |
| 3 | chr1:197743887..197745758-chr1:197837447..197840153,2 | MCF-7 | breast: | |
| 4 | chr1:197837087..197838981-chr1:197871128..197873334,2 | K562 | blood: | |
| 5 | chr1:197837094..197838066-chr1:197870113..197870986,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000203724 | Chromatin interaction |
| ENSG00000213047 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs13374542 | 1.00[AMR][1000 genomes] |
| rs57594005 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59416760 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6428420 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6686513 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6686735 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6688961 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6694441 | 1.00[AMR][1000 genomes] |
| rs73075682 | 1.00[AMR][1000 genomes] |
| rs73075690 | 1.00[AMR][1000 genomes] |
| rs73075699 | 1.00[AMR][1000 genomes] |
| rs73077604 | 1.00[AMR][1000 genomes] |
| rs73077619 | 1.00[AMR][1000 genomes] |
| rs73079634 | 1.00[AMR][1000 genomes] |
| rs73079655 | 1.00[AMR][1000 genomes] |
| rs73081752 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73081769 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73081781 | 1.00[AMR][1000 genomes] |
| rs73081791 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73081794 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73083805 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7519957 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7526273 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7528697 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7539224 | 1.00[AMR][1000 genomes] |
| rs7539656 | 1.00[AMR][1000 genomes] |
| rs7550287 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999662 | chr1:197821769-197892803 | Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv2762214 | chr1:197821769-197897496 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004130 | chr1:197822757-197879728 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:197830800-197838000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
