Variant report

Variant	rs73083805
Chromosome Location	chr1:197869597-197869598
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:197869550-197869914	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197867532..197870079-chr1:197879664..197881900,2	MCF-7	breast:
2	chr1:197852642..197855916-chr1:197868509..197871754,4	K562	blood:
3	chr1:197854984..197856657-chr1:197868771..197871042,2	MCF-7	breast:
4	chr1:197846538..197849323-chr1:197868745..197871219,2	K562	blood:
5	chr1:197868383..197873929-chr1:197879774..197886951,11	K562	blood:
6	chr1:197589072..197591210-chr1:197869389..197871668,2	MCF-7	breast:
7	chr1:197868359..197870237-chr1:197972467..197974974,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10082059	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13374542	1.00[AMR][1000 genomes]
rs57594005	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59416760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6428420	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686513	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686735	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6688961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694441	1.00[AMR][1000 genomes]
rs73077619	1.00[AMR][1000 genomes]
rs73079634	1.00[AMR][1000 genomes]
rs73079655	1.00[AMR][1000 genomes]
rs73081752	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081781	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081791	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081794	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7519957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7526273	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7528697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7539224	1.00[AMR][1000 genomes]
rs7539656	1.00[AMR][1000 genomes]
rs7550287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999662	chr1:197821769-197892803	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv2762214	chr1:197821769-197897496	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	nsv1004130	chr1:197822757-197879728	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197867200-197870800	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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