Variant report

Variant	rs73081791
Chromosome Location	chr1:197861251-197861252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10082059	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13374542	1.00[AMR][1000 genomes]
rs57594005	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59416760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6428420	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6688961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694441	1.00[AMR][1000 genomes]
rs73075699	1.00[AMR][1000 genomes]
rs73077604	1.00[AMR][1000 genomes]
rs73077619	1.00[AMR][1000 genomes]
rs73079634	1.00[AMR][1000 genomes]
rs73079655	1.00[AMR][1000 genomes]
rs73081752	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081769	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081781	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083805	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7519957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7526273	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7528697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7539224	1.00[AMR][1000 genomes]
rs7539656	1.00[AMR][1000 genomes]
rs7550287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999662	chr1:197821769-197892803	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv2762214	chr1:197821769-197897496	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	nsv1004130	chr1:197822757-197879728	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197859800-197861600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr1:197859800-197862000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:197860000-197861600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:197860000-197862000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:197860400-197861800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:197860400-197861800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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