Variant report
| Variant | rs7550287 |
|---|---|
| Chromosome Location | chr1:197859556-197859557 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:197857378..197860156-chr1:197868742..197873458,6 | MCF-7 | breast: | |
| 2 | chr1:197857645..197862735-chr1:197869365..197873854,5 | K562 | blood: | |
| 3 | chr1:197858699..197860624-chr1:197865430..197867942,2 | K562 | blood: | |
| 4 | chr1:197858722..197861449-chr1:197862605..197866101,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000203724 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10082059 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13374542 | 1.00[AMR][1000 genomes] |
| rs57594005 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59416760 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6428420 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6686513 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6686735 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6688961 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6694441 | 1.00[AMR][1000 genomes] |
| rs73075699 | 1.00[AMR][1000 genomes] |
| rs73077604 | 1.00[AMR][1000 genomes] |
| rs73077619 | 1.00[AMR][1000 genomes] |
| rs73079634 | 1.00[AMR][1000 genomes] |
| rs73079655 | 1.00[AMR][1000 genomes] |
| rs73081752 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73081769 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73081781 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73081791 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73081794 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73083805 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7519957 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7526273 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7528697 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7539224 | 1.00[AMR][1000 genomes] |
| rs7539656 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999662 | chr1:197821769-197892803 | Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv2762214 | chr1:197821769-197897496 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004130 | chr1:197822757-197879728 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
