Variant report

Variant	rs10087919
Chromosome Location	chr8:103637997-103637998
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10095268	1.00[AMR][1000 genomes]
rs10096528	0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109094	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11985825	1.00[AMR][1000 genomes]
rs28533866	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536167	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536483	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537271	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28541795	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28566564	1.00[AMR][1000 genomes]
rs28634259	1.00[AMR][1000 genomes]
rs28648881	1.00[AMR][1000 genomes]
rs28668330	0.95[AFR][1000 genomes]
rs60806270	1.00[AMR][1000 genomes]
rs9694619	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103634200-103639600	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
4	chr8:103635600-103639600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:103635800-103639400	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:103636200-103639600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:103637200-103639400	Weak transcription	Fetal Brain Male	brain
8	chr8:103637200-103642400	Enhancers	Placenta	Placenta
9	chr8:103637600-103638400	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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