Variant report
| Variant | rs60806270 |
|---|---|
| Chromosome Location | chr8:103618108-103618109 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:103605858..103620203-chr8:103816083..103827169,111 | MCF-7 | breast: | |
| 2 | chr8:103610682..103613281-chr8:103617723..103620341,2 | K562 | blood: | |
| 3 | chr8:103617809..103619552-chr8:103625392..103627516,2 | K562 | blood: | |
| 4 | chr8:103610633..103618537-chr8:103662081..103669570,24 | MCF-7 | breast: | |
| 5 | chr8:103613642..103617354-chr8:103617536..103621858,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000155090 | Chromatin interaction |
| ENSG00000253669 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10087919 | 1.00[AMR][1000 genomes] |
| rs10095268 | 1.00[AMR][1000 genomes] |
| rs10096528 | 1.00[AMR][1000 genomes] |
| rs10109094 | 1.00[AMR][1000 genomes] |
| rs11985825 | 1.00[AMR][1000 genomes] |
| rs28533866 | 1.00[AMR][1000 genomes] |
| rs28536167 | 1.00[AMR][1000 genomes] |
| rs28536483 | 1.00[AMR][1000 genomes] |
| rs28537271 | 1.00[AMR][1000 genomes] |
| rs28541795 | 1.00[AMR][1000 genomes] |
| rs28566564 | 1.00[AMR][1000 genomes] |
| rs28634259 | 1.00[AMR][1000 genomes] |
| rs28648881 | 1.00[AMR][1000 genomes] |
| rs9694619 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv33118 | chr8:103358567-104068172 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 145 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031769 | chr8:103460754-103620283 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv539703 | chr8:103460754-103620283 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 4 | esv2762761 | chr8:103492356-103625244 | Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 5 | nsv1028329 | chr8:103574775-103684362 | Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:103616200-103622000 | Weak transcription | K562 | blood |
| 2 | chr8:103616600-103620400 | Weak transcription | Placenta | Placenta |
