Variant report

Variant	rs10109094
Chromosome Location	chr8:103630830-103630831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10087919	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095268	1.00[AMR][1000 genomes]
rs10096528	1.00[ASW][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11985825	1.00[AMR][1000 genomes]
rs28533866	1.00[AMR][1000 genomes]
rs28536167	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537271	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28541795	1.00[AMR][1000 genomes]
rs28566564	1.00[AMR][1000 genomes]
rs28634259	1.00[AMR][1000 genomes]
rs28648881	1.00[AMR][1000 genomes]
rs28668330	0.85[AFR][1000 genomes]
rs60806270	1.00[AMR][1000 genomes]
rs9694619	0.82[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103627800-103631200	Enhancers	Placenta	Placenta
3	chr8:103628000-103631200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:103629000-103634000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:103630000-103633800	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:103630200-103631000	Weak transcription	A549	lung
7	chr8:103630200-103631200	Enhancers	Hela-S3	cervix
8	chr8:103630200-103635400	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:103630400-103631000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr8:103630400-103632800	Weak transcription	Primary B cells from cord blood	blood
11	chr8:103630400-103635800	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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