Variant report

Variant	rs11985825
Chromosome Location	chr8:103702073-103702074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103701249..103703265-chr8:103716170..103718966,2	K562	blood:
2	chr8:103701636..103704144-chr8:103741047..103743946,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10087919	1.00[AMR][1000 genomes]
rs10095268	1.00[AMR][1000 genomes]
rs10096528	1.00[AMR][1000 genomes]
rs10109094	1.00[AMR][1000 genomes]
rs28533866	1.00[AMR][1000 genomes]
rs28536167	1.00[AMR][1000 genomes]
rs28536483	1.00[AMR][1000 genomes]
rs28537271	1.00[AMR][1000 genomes]
rs28541795	1.00[AMR][1000 genomes]
rs28566564	1.00[AMR][1000 genomes]
rs28634259	1.00[AMR][1000 genomes]
rs28648881	1.00[AMR][1000 genomes]
rs60806270	1.00[AMR][1000 genomes]
rs9694619	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1026755	chr8:103676970-103728556	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018625	chr8:103676970-103729197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103679800-103706400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:103690200-103704800	Weak transcription	A549	lung
3	chr8:103698400-103704000	Weak transcription	Gastric	stomach
4	chr8:103698600-103704400	Weak transcription	NH-A	brain
5	chr8:103699400-103704200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:103699400-103704200	Weak transcription	NHLF	lung
7	chr8:103699400-103704400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:103699400-103704600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:103700800-103704400	Weak transcription	Hela-S3	cervix
10	chr8:103701000-103704800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:103701200-103703800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:103701200-103703800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:103701200-103703800	Weak transcription	NHEK	skin
14	chr8:103701200-103704200	Weak transcription	Osteobl	bone
15	chr8:103701200-103704600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:103701200-103704600	Weak transcription	HSMM	muscle
17	chr8:103701400-103704000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:103701400-103704000	Weak transcription	HMEC	breast
19	chr8:103701400-103704200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:103701400-103704400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:103701400-103704400	Weak transcription	HUVEC	blood vessel
22	chr8:103701400-103704600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:103701400-103705000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:103701400-103708200	Weak transcription	K562	blood
25	chr8:103701600-103704600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:103701600-103704800	Weak transcription	HSMMtube	muscle

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