Variant report

Variant	rs28541795
Chromosome Location	chr8:103599282-103599283
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103597181..103599862-chr8:103823976..103826204,2	K562	blood:
2	chr8:103421770..103426734-chr8:103594994..103599983,8	K562	blood:
3	chr8:103596405..103599934-chr8:103821942..103825203,3	MCF-7	breast:
4	chr8:103596770..103599331-chr8:103606707..103609510,2	K562	blood:
5	chr8:103596320..103599073-chr8:103599256..103601533,2	MCF-7	breast:
6	chr8:103597647..103599314-chr8:103667278..103670180,2	K562	blood:
7	chr8:103594551..103603288-chr8:103816901..103824856,23	MCF-7	breast:
8	chr8:103424271..103427085-chr8:103597732..103599983,3	K562	blood:
9	chr8:103597554..103599920-chr8:103818011..103821363,3	MCF-7	breast:
10	chr8:103588739..103590640-chr8:103597997..103600503,2	MCF-7	breast:
11	chr8:103415838..103418096-chr8:103597616..103599630,2	K562	blood:
12	chr8:103596917..103599330-chr8:103603358..103606131,2	K562	blood:
13	chr8:103422925..103426536-chr8:103595832..103599844,5	MCF-7	breast:
14	chr8:103415838..103418096-chr8:103596950..103599630,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction
ENSG00000253669	Chromatin interaction
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10087919	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095268	1.00[AMR][1000 genomes]
rs10096528	1.00[AMR][1000 genomes]
rs10109094	1.00[AMR][1000 genomes]
rs11985825	1.00[AMR][1000 genomes]
rs28533866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536167	1.00[AMR][1000 genomes]
rs28536483	1.00[AMR][1000 genomes]
rs28537271	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28566564	1.00[AMR][1000 genomes]
rs28634259	1.00[AMR][1000 genomes]
rs28648881	1.00[AMR][1000 genomes]
rs28668330	0.89[AFR][1000 genomes]
rs60806270	1.00[AMR][1000 genomes]
rs9694619	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1031769	chr8:103460754-103620283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv539703	chr8:103460754-103620283	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103591600-103602200	Weak transcription	Right Ventricle	heart
2	chr8:103591600-103602400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:103596600-103612600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:103597200-103602200	Weak transcription	Left Ventricle	heart
5	chr8:103597600-103602200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:103598200-103599400	Enhancers	Dnd41	blood
7	chr8:103598200-103602400	Weak transcription	Hela-S3	cervix
8	chr8:103598200-103603000	Weak transcription	NH-A	brain
9	chr8:103598400-103599400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:103598400-103602000	Weak transcription	Brain Anterior Caudate	brain
11	chr8:103598400-103602200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:103598400-103602200	Weak transcription	Brain Angular Gyrus	brain
13	chr8:103598400-103602200	Enhancers	K562	blood
14	chr8:103598400-103602400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:103598400-103602400	Weak transcription	Fetal Brain Male	brain
16	chr8:103598400-103603000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:103598400-103612400	Weak transcription	Fetal Intestine Small	intestine
18	chr8:103598600-103601600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:103598600-103601800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:103598600-103601800	Weak transcription	Fetal Lung	lung
21	chr8:103598600-103602000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:103598600-103602000	Weak transcription	Right Atrium	heart
23	chr8:103598600-103602200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:103598600-103602200	Weak transcription	Fetal Heart	heart
25	chr8:103598600-103602400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr8:103598600-103602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:103598600-103602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:103598600-103604600	Weak transcription	Placenta	Placenta
29	chr8:103598800-103611800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr8:103599000-103602800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:103599000-103604600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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