Variant report

Variant	rs10088038
Chromosome Location	chr8:59844291-59844292
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10087733	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089981	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091865	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094623	1.00[AMR][1000 genomes]
rs10096247	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10100038	1.00[ASW][hapmap];0.90[MKK][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100419	0.82[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104226	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104748	1.00[ASW][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107452	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107892	0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10108216	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110441	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112681	1.00[AMR][1000 genomes]
rs10113483	1.00[AMR][1000 genomes]
rs10217096	1.00[AMR][1000 genomes]
rs10282864	1.00[ASW][hapmap];0.87[LWK][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282869	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283228	0.87[LWK][hapmap];0.90[MKK][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283319	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439832	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924299	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924321	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924324	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28399105	1.00[AMR][1000 genomes]
rs28419414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28422052	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28523574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28550650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28616757	0.96[AFR][1000 genomes]
rs28637974	1.00[AMR][1000 genomes]
rs28654940	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41468545	1.00[ASW][hapmap]
rs57226085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57885629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58821545	1.00[AMR][1000 genomes]
rs7002879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7002880	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59831200-59860200	Weak transcription	Gastric	stomach
10	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:59837800-59845800	Weak transcription	HUVEC	blood vessel
15	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
16	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
17	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:59840000-59849600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:59840000-59854000	Strong transcription	Dnd41	blood
20	chr8:59840200-59845200	Weak transcription	Osteobl	bone
21	chr8:59840200-59848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:59840400-59850400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:59840400-59850400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:59840600-59849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr8:59840800-59850200	Weak transcription	Fetal Stomach	stomach
26	chr8:59840800-59850400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:59841000-59845800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:59841000-59848200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:59841000-59848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:59841000-59848800	Weak transcription	Thymus	Thymus
31	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
33	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr8:59842400-59851400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr8:59843000-59852600	Strong transcription	Primary T cells from cord blood	blood
36	chr8:59843400-59844600	Weak transcription	Fetal Thymus	thymus
37	chr8:59843400-59846400	Weak transcription	Small Intestine	intestine
38	chr8:59843800-59845800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr8:59844200-59844400	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr8:59844200-59845200	Enhancers	Colon Smooth Muscle	Colon

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