Variant report

Variant	rs10104748
Chromosome Location	chr8:59849603-59849604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10087733	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10088038	1.00[ASW][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089976	0.82[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089981	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091865	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094623	1.00[AMR][1000 genomes]
rs10096247	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10100038	1.00[ASW][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100419	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104226	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107452	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107892	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10108216	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110441	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112681	1.00[AMR][1000 genomes]
rs10113483	1.00[AMR][1000 genomes]
rs10217096	1.00[AMR][1000 genomes]
rs10282864	1.00[ASW][hapmap];0.87[LWK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10282869	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283228	0.87[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283319	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439832	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924245	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924250	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924299	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924321	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924324	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391449	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28399105	1.00[AMR][1000 genomes]
rs28419414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28422052	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28523574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28550650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28616757	0.92[AFR][1000 genomes]
rs28637974	1.00[AMR][1000 genomes]
rs28654940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41468545	1.00[ASW][hapmap]
rs57226085	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57885629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58821545	1.00[AMR][1000 genomes]
rs7002879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7002880	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:59831200-59860200	Weak transcription	Gastric	stomach
4	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
9	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
10	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:59840000-59854000	Strong transcription	Dnd41	blood
12	chr8:59840400-59850400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:59840400-59850400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:59840800-59850200	Weak transcription	Fetal Stomach	stomach
15	chr8:59840800-59850400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
18	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:59842400-59851400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr8:59843000-59852600	Strong transcription	Primary T cells from cord blood	blood
21	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:59844400-59851200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:59844600-59853400	Strong transcription	Fetal Thymus	thymus
24	chr8:59845200-59851600	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:59847000-59857800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:59847200-59856000	Weak transcription	NHDF-Ad	bronchial
27	chr8:59847400-59853000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:59847400-59858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:59847600-59857400	Weak transcription	HUVEC	blood vessel
30	chr8:59847600-59860400	Weak transcription	Small Intestine	intestine
31	chr8:59847800-59860600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr8:59848200-59851800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:59848400-59850200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:59848400-59852200	Strong transcription	Osteobl	bone
35	chr8:59848400-59852400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:59848600-59849800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr8:59848800-59850800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr8:59848800-59852200	Strong transcription	Thymus	Thymus
39	chr8:59848800-59852600	Strong transcription	Primary hematopoietic stem cells	blood
40	chr8:59849000-59850000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:59849000-59850800	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr8:59849000-59852400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr8:59849000-59858000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr8:59849000-59861000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr8:59849200-59850000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:59849600-59849800	Genic enhancers	Stomach Smooth Muscle	stomach
47	chr8:59849600-59850200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
48	chr8:59849600-59852000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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