Variant report

Variant	rs10100038
Chromosome Location	chr8:59840269-59840270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59838431..59840418-chr8:59841097..59843754,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10087733	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10088038	1.00[ASW][hapmap];0.90[MKK][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089976	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089981	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091865	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094623	1.00[AMR][1000 genomes]
rs10096247	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10100419	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104226	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104748	1.00[ASW][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107452	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107892	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10108216	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110441	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112681	1.00[AMR][1000 genomes]
rs10113483	1.00[AMR][1000 genomes]
rs10217096	1.00[AMR][1000 genomes]
rs10282864	1.00[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282869	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283228	0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283319	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439832	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924299	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924321	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924324	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28399105	1.00[AMR][1000 genomes]
rs28419414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28422052	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28523574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28550650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28616757	0.96[AFR][1000 genomes]
rs28637974	1.00[AMR][1000 genomes]
rs28654940	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41468545	1.00[ASW][hapmap]
rs57226085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57885629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58821545	1.00[AMR][1000 genomes]
rs7002879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7002880	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59827400-59843000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:59831200-59860200	Weak transcription	Gastric	stomach
11	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:59835200-59841000	Strong transcription	Primary T cells from cord blood	blood
14	chr8:59835400-59841000	Strong transcription	Fetal Thymus	thymus
15	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:59837800-59845800	Weak transcription	HUVEC	blood vessel
18	chr8:59838600-59841000	Strong transcription	Thymus	Thymus
19	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
20	chr8:59839400-59840400	Enhancers	Colon Smooth Muscle	Colon
21	chr8:59839400-59841000	Strong transcription	Duodenum Mucosa	Duodenum
22	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
23	chr8:59839600-59840400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr8:59839600-59840600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr8:59839600-59841000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:59839800-59840800	Strong transcription	Fetal Stomach	stomach
28	chr8:59840000-59840400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr8:59840000-59840400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr8:59840000-59840600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:59840000-59840600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr8:59840000-59841000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:59840000-59841000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:59840000-59841000	Strong transcription	Fetal Intestine Small	intestine
35	chr8:59840000-59841000	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr8:59840000-59849600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr8:59840000-59854000	Strong transcription	Dnd41	blood
38	chr8:59840200-59840800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:59840200-59841000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:59840200-59845200	Weak transcription	Osteobl	bone
41	chr8:59840200-59848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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