Variant report

Variant	rs10096247
Chromosome Location	chr8:59809307-59809308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10087733	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10088038	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10089976	1.00[AMR][1000 genomes]
rs10089981	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10091865	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10094623	1.00[AMR][1000 genomes]
rs10100038	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10100419	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10104226	1.00[AMR][1000 genomes]
rs10104748	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10107452	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10107892	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10108216	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10110288	1.00[AMR][1000 genomes]
rs10110441	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10112681	1.00[AMR][1000 genomes]
rs10113483	1.00[AMR][1000 genomes]
rs10217096	1.00[AMR][1000 genomes]
rs10282864	1.00[AMR][1000 genomes]
rs10282869	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10283065	1.00[AMR][1000 genomes]
rs10283228	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10283319	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs13439552	1.00[AMR][1000 genomes]
rs13439832	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs16924236	1.00[AMR][1000 genomes]
rs16924245	1.00[AMR][1000 genomes]
rs16924248	1.00[AMR][1000 genomes]
rs16924250	1.00[AMR][1000 genomes]
rs16924251	1.00[AMR][1000 genomes]
rs16924299	1.00[AMR][1000 genomes]
rs16924321	1.00[AMR][1000 genomes]
rs16924324	1.00[AMR][1000 genomes]
rs28391449	1.00[AMR][1000 genomes]
rs28399105	1.00[AMR][1000 genomes]
rs28419414	1.00[AMR][1000 genomes]
rs28422052	1.00[AMR][1000 genomes]
rs28523574	1.00[AMR][1000 genomes]
rs28550650	1.00[AMR][1000 genomes]
rs28637974	1.00[AMR][1000 genomes]
rs28654940	1.00[AMR][1000 genomes]
rs57226085	1.00[AMR][1000 genomes]
rs57885629	1.00[AMR][1000 genomes]
rs58821545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7002879	1.00[AMR][1000 genomes]
rs7002880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890940	chr8:59785412-59809785	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:59790800-59811200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:59791400-59811000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
5	chr8:59794800-59811000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:59800600-59809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:59800800-59809600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:59800800-59810600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:59800800-59811000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:59801400-59811000	Weak transcription	Primary T cells from cord blood	blood
11	chr8:59802200-59810800	Weak transcription	HUVEC	blood vessel
12	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:59804200-59811000	Weak transcription	Gastric	stomach
14	chr8:59805000-59812200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
16	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
17	chr8:59805400-59810600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:59805600-59811000	Weak transcription	NHDF-Ad	bronchial
20	chr8:59806000-59814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:59807000-59810000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:59808200-59810200	Strong transcription	Fetal Thymus	thymus
24	chr8:59808400-59811400	Enhancers	Fetal Brain Male	brain
25	chr8:59808600-59815200	Weak transcription	Osteobl	bone
26	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
27	chr8:59809200-59810800	Weak transcription	Dnd41	blood

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