Variant report

Variant	rs10088066
Chromosome Location	chr8:92449534-92449535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:92414483..92416094-chr8:92447591..92449558,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10441533	0.82[ASN][1000 genomes]
rs10504905	0.90[EUR][1000 genomes]
rs13252632	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13260353	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13261206	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13268229	0.82[ASN][1000 genomes]
rs13278575	1.00[ASN][1000 genomes]
rs1457052	1.00[CHB][hapmap]
rs1505220	0.82[ASN][1000 genomes]
rs16912805	1.00[JPT][hapmap]
rs16912814	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16912889	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16912960	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16912967	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16912969	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16913009	0.91[EUR][1000 genomes]
rs16913030	0.93[EUR][1000 genomes]
rs16913033	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16913807	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16914149	0.82[ASN][1000 genomes]
rs34257386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34667604	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35397725	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35588710	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35765746	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734031	0.85[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734032	0.85[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734035	0.85[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734581	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471282	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67764740	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7012492	1.00[ASN][1000 genomes]
rs72667833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829874	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9297893	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891190	chr8:92354921-92484872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv523642	chr8:92391870-92542963	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1018648	chr8:92399692-92527826	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92447600-92451400	Weak transcription	NHDF-Ad	bronchial

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