Variant report

Variant	rs6471282
Chromosome Location	chr8:92459305-92459306
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10088066	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10504905	0.90[EUR][1000 genomes]
rs13252632	0.93[EUR][1000 genomes]
rs13260353	0.93[EUR][1000 genomes]
rs13261206	0.93[EUR][1000 genomes]
rs13278575	0.94[ASN][1000 genomes]
rs1457052	1.00[CHB][hapmap]
rs16912805	1.00[JPT][hapmap]
rs16912814	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs16912889	0.93[EUR][1000 genomes]
rs16912960	0.93[EUR][1000 genomes]
rs16912967	0.93[EUR][1000 genomes]
rs16912969	0.93[EUR][1000 genomes]
rs16913009	0.91[EUR][1000 genomes]
rs16913030	0.93[EUR][1000 genomes]
rs16913033	0.93[EUR][1000 genomes]
rs16913807	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28735086	0.83[ASN][1000 genomes]
rs34257386	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34667604	0.93[EUR][1000 genomes]
rs35397725	0.93[EUR][1000 genomes]
rs35588710	0.90[EUR][1000 genomes]
rs35765746	0.93[EUR][1000 genomes]
rs4734031	0.85[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs4734032	0.85[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs4734035	0.85[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs4734581	0.93[EUR][1000 genomes]
rs56160120	0.83[ASN][1000 genomes]
rs57453564	0.83[ASN][1000 genomes]
rs57610492	0.83[ASN][1000 genomes]
rs58830410	0.83[ASN][1000 genomes]
rs67764740	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7012492	0.94[ASN][1000 genomes]
rs72667833	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73309604	0.83[ASN][1000 genomes]
rs7829874	0.93[EUR][1000 genomes]
rs7832321	0.83[ASN][1000 genomes]
rs9297893	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891190	chr8:92354921-92484872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv523642	chr8:92391870-92542963	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1018648	chr8:92399692-92527826	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92458800-92460400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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