Variant report

Variant	rs16913807
Chromosome Location	chr8:92477035-92477036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:92473846..92475836-chr8:92476432..92479111,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10088066	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10504905	1.00[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs13252632	0.91[EUR][1000 genomes]
rs13260353	0.91[EUR][1000 genomes]
rs13261206	0.91[EUR][1000 genomes]
rs13268229	0.88[ASN][1000 genomes]
rs13270617	0.81[TSI][hapmap]
rs13278575	0.94[ASN][1000 genomes]
rs1457052	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16912814	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs16912889	0.91[EUR][1000 genomes]
rs16912960	0.91[EUR][1000 genomes]
rs16912967	0.91[EUR][1000 genomes]
rs16912969	0.91[EUR][1000 genomes]
rs16913009	0.88[EUR][1000 genomes]
rs16913030	0.91[EUR][1000 genomes]
rs16913033	0.91[EUR][1000 genomes]
rs16914149	0.88[ASN][1000 genomes]
rs28735086	0.82[ASN][1000 genomes]
rs34257386	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34667604	0.91[EUR][1000 genomes]
rs35397725	0.91[EUR][1000 genomes]
rs35588710	0.88[EUR][1000 genomes]
rs35765746	0.91[EUR][1000 genomes]
rs4734031	0.85[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs4734032	0.85[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs4734035	0.85[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs4734581	0.91[EUR][1000 genomes]
rs56160120	0.82[ASN][1000 genomes]
rs57453564	0.82[ASN][1000 genomes]
rs57610492	0.82[ASN][1000 genomes]
rs58830410	0.82[ASN][1000 genomes]
rs6471282	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67168532	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67764740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012492	0.94[ASN][1000 genomes]
rs72667833	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73309604	0.82[ASN][1000 genomes]
rs7829874	0.91[EUR][1000 genomes]
rs7832321	0.82[ASN][1000 genomes]
rs9297895	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891190	chr8:92354921-92484872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv523642	chr8:92391870-92542963	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1018648	chr8:92399692-92527826	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92473200-92477800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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