Variant report
| Variant | rs10089530 |
|---|---|
| Chromosome Location | chr8:51182831-51182832 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10088356 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10094257 | 1.00[AMR][1000 genomes] |
| rs10095478 | 1.00[YRI][hapmap] |
| rs10100260 | 1.00[AMR][1000 genomes] |
| rs10101437 | 1.00[AMR][1000 genomes] |
| rs10101969 | 1.00[AMR][1000 genomes] |
| rs10104566 | 1.00[AMR][1000 genomes] |
| rs10106724 | 1.00[YRI][hapmap] |
| rs10106797 | 1.00[AMR][1000 genomes] |
| rs10111321 | 1.00[AMR][1000 genomes] |
| rs10282856 | 1.00[AMR][1000 genomes] |
| rs10283042 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs16914703 | 1.00[YRI][hapmap] |
| rs28376366 | 1.00[AMR][1000 genomes] |
| rs28420931 | 1.00[AMR][1000 genomes] |
| rs28429447 | 1.00[AMR][1000 genomes] |
| rs28562037 | 1.00[AMR][1000 genomes] |
| rs28574640 | 1.00[AMR][1000 genomes] |
| rs28615617 | 1.00[AMR][1000 genomes] |
| rs28621414 | 1.00[AMR][1000 genomes] |
| rs28751973 | 1.00[AMR][1000 genomes] |
| rs28764900 | 1.00[AMR][1000 genomes] |
| rs28789069 | 1.00[AMR][1000 genomes] |
| rs28799874 | 1.00[AMR][1000 genomes] |
| rs28814120 | 1.00[AMR][1000 genomes] |
| rs28840383 | 1.00[AMR][1000 genomes] |
| rs61498509 | 1.00[AMR][1000 genomes] |
| rs7357389 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv948436 | chr8:51115028-51917504 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv524203 | chr8:51161232-51188675 | Active TSS Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv470212 | chr8:51176635-51227506 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv611341 | chr8:51182810-51194608 | ZNF genes & repeats Enhancers Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
