Variant report

Variant	rs1009687
Chromosome Location	chr6:133176591-133176592
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133176521..133178279-chr6:133183848..133185763,3	MCF-7	breast:
2	chr6:133135036..133137083-chr6:133175339..133177037,2	K562	blood:
3	chr6:133170741..133173404-chr6:133176538..133178565,2	K562	blood:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1001018	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872399	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12192765	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs12202302	0.80[JPT][hapmap]
rs1408065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1544060	0.83[EUR][1000 genomes]
rs1903143	0.81[CHB][hapmap]
rs271179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4895945	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4897619	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs528694	0.97[ASN][1000 genomes]
rs6569855	0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6907421	0.95[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs6921262	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6926466	0.80[JPT][hapmap]
rs6927761	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs755894	0.83[EUR][1000 genomes]
rs761125	0.80[JPT][hapmap]
rs7740291	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7768053	0.95[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7768634	0.91[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs7774585	0.95[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs9321378	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9321379	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9373033	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375927	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385624	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9389035	0.81[AMR][1000 genomes]
rs9402461	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9402465	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493451	0.86[JPT][hapmap]
rs9493459	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9493464	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493468	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493470	0.81[CHB][hapmap]
rs9493474	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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