Variant report

Variant	rs9321379
Chromosome Location	chr6:133158449-133158450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133148667..133150225-chr6:133157678..133160436,2	MCF-7	breast:
2	chr6:133141835..133144313-chr6:133156927..133159674,3	K562	blood:
3	chr6:133133683..133137845-chr6:133157752..133163297,5	K562	blood:
4	chr6:133151897..133155334-chr6:133156928..133160559,4	K562	blood:

Variant related genes	Relation type
ENSG00000206754	Chromatin interaction
ENSG00000112306	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1001018	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1009687	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872399	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1124450	0.81[ASN][1000 genomes]
rs12192765	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12193918	0.81[ASN][1000 genomes]
rs12200907	0.81[ASN][1000 genomes]
rs1359142	0.81[ASN][1000 genomes]
rs1408062	0.80[ASN][1000 genomes]
rs1408063	0.80[ASN][1000 genomes]
rs1544060	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1965895	0.81[ASN][1000 genomes]
rs271179	0.82[ASN][1000 genomes]
rs4895945	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4897619	0.81[ASN][1000 genomes]
rs528694	0.81[ASN][1000 genomes]
rs6569855	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6569857	0.81[ASN][1000 genomes]
rs6569858	0.81[ASN][1000 genomes]
rs6569859	0.81[ASN][1000 genomes]
rs6907421	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6921262	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6925225	0.81[ASN][1000 genomes]
rs6927761	0.84[ASN][1000 genomes]
rs755894	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7743635	0.80[ASN][1000 genomes]
rs7744235	0.80[ASN][1000 genomes]
rs7751333	0.81[ASN][1000 genomes]
rs7751359	0.81[ASN][1000 genomes]
rs7755422	0.81[ASN][1000 genomes]
rs7756588	0.81[ASN][1000 genomes]
rs7759900	0.81[ASN][1000 genomes]
rs7764252	0.80[ASN][1000 genomes]
rs7766944	0.81[ASN][1000 genomes]
rs7768053	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768470	0.81[ASN][1000 genomes]
rs7768634	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7774585	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321378	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321380	0.81[ASN][1000 genomes]
rs9373030	0.81[ASN][1000 genomes]
rs9373033	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9375924	0.80[ASN][1000 genomes]
rs9375925	0.80[ASN][1000 genomes]
rs9375927	0.81[ASN][1000 genomes]
rs9385624	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9402460	0.81[ASN][1000 genomes]
rs9402461	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402462	0.80[ASN][1000 genomes]
rs9402465	0.81[ASN][1000 genomes]
rs9493459	0.85[ASN][1000 genomes]
rs9493464	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493468	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
5	esv3403441	chr6:133157730-133160114	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3359825	chr6:133157739-133160116	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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