Variant report
| Variant | rs10872399 |
|---|---|
| Chromosome Location | chr6:133168026-133168027 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000112306 | Chromatin interaction |
| ENSG00000206754 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1001018 | 0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1009687 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs271179 | 0.81[ASN][1000 genomes] |
| rs4895945 | 0.87[ASN][1000 genomes] |
| rs4897619 | 0.82[ASN][1000 genomes] |
| rs528694 | 0.80[ASN][1000 genomes] |
| rs6569855 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6921262 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6927761 | 0.83[ASN][1000 genomes] |
| rs7768053 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9321378 | 0.88[ASN][1000 genomes] |
| rs9321379 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9373033 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9375927 | 0.82[ASN][1000 genomes] |
| rs9385624 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9402461 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9402465 | 0.82[ASN][1000 genomes] |
| rs9493459 | 0.85[ASN][1000 genomes] |
| rs9493464 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9493468 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532069 | chr6:132776411-133462292 | Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015742 | chr6:132933666-133285852 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 71 gene(s) | inside rSNPs | diseases |
| 3 | nsv886676 | chr6:133111706-133168582 | Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 66 gene(s) | inside rSNPs | diseases |
| 4 | esv1806734 | chr6:133125643-133168582 | Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 63 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
