Variant report

Variant	rs4895945
Chromosome Location	chr6:133168669-133168670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133134186..133135888-chr6:133168555..133170762,2	K562	blood:
2	chr6:133139605..133142425-chr6:133167716..133170536,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1001018	0.85[ASN][1000 genomes]
rs1009687	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10872399	0.87[ASN][1000 genomes]
rs12192765	0.80[ASN][1000 genomes]
rs1544060	0.80[ASN][1000 genomes]
rs271112	0.80[AMR][1000 genomes]
rs271179	0.94[ASN][1000 genomes]
rs4897619	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs528694	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6569855	0.89[ASN][1000 genomes]
rs6907421	0.80[ASN][1000 genomes]
rs6921262	0.89[ASN][1000 genomes]
rs6927761	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs755894	0.80[ASN][1000 genomes]
rs7768053	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7768634	0.80[ASN][1000 genomes]
rs7774585	0.81[ASN][1000 genomes]
rs9321378	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321379	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9373033	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9375921	0.81[ASN][1000 genomes]
rs9375927	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9385624	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389035	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9402461	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9402465	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9493459	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9493464	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9493468	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133168200-133169200	Enhancers	Liver	Liver

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