Variant report

Variant	rs6921262
Chromosome Location	chr6:133151613-133151614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133151125..133151898-chr6:133283825..133285077,5	MCF-7	breast:
2	chr6:133151095..133151913-chr6:133282483..133283322,2	MCF-7	breast:
3	chr6:133151116..133151935-chr6:133874509..133875482,3	MCF-7	breast:
4	chr6:133151099..133152076-chr6:133282420..133283410,5	MCF-7	breast:
5	chr6:133151304..133151920-chr6:133833595..133834151,2	MCF-7	breast:
6	chr6:133150152..133152401-chr6:133214566..133217408,2	MCF-7	breast:
7	chr6:133151552..133152231-chr6:133505787..133506589,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1001018	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1009687	0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10872399	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12192765	0.91[CEU][hapmap];0.89[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12202302	0.84[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs12206120	0.81[CHB][hapmap]
rs1408065	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1544060	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs271179	0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs3756969	0.87[ASN][1000 genomes]
rs3778174	0.88[ASN][1000 genomes]
rs4895945	0.89[ASN][1000 genomes]
rs4897619	0.85[ASN][1000 genomes]
rs528694	0.83[ASN][1000 genomes]
rs6569855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907421	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6926466	0.84[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs6927761	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs755894	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs761125	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs7740291	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs7764152	0.85[CHB][hapmap]
rs7768053	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7768634	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7774585	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321378	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9321379	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373033	0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs9375921	0.90[ASN][1000 genomes]
rs9375927	0.80[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs9385624	0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs9389035	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9402461	0.95[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9402465	0.85[ASN][1000 genomes]
rs9493451	0.84[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs9493459	0.80[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9493464	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9493468	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133140800-133153800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:133141400-133151800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:133151600-133152000	Enhancers	Brain Cingulate Gyrus	brain

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