Variant report

Variant	rs10103527
Chromosome Location	chr8:125802466-125802467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125798704..125802560-chr8:125827231..125829155,4	K562	blood:
2	chr8:125796403..125800528-chr8:125801363..125805897,4	K562	blood:
3	chr8:125793830..125795727-chr8:125800915..125802469,3	MCF-7	breast:
4	chr8:125798304..125800528-chr8:125800814..125804175,4	K562	blood:

Variant related genes	Relation type
ENSG00000255491	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10100875	1.00[AFR][1000 genomes]
rs28507479	0.86[AFR][1000 genomes]
rs57470157	0.92[AFR][1000 genomes]
rs59305035	0.97[AFR][1000 genomes]
rs59782834	0.97[AFR][1000 genomes]
rs60050058	1.00[AFR][1000 genomes]
rs73330458	0.95[AFR][1000 genomes]
rs73330462	0.95[AFR][1000 genomes]
rs73330464	0.95[AFR][1000 genomes]
rs73347087	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125800000-125803400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:125800000-125803800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:125800200-125803400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:125800400-125803200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:125801000-125803400	Enhancers	HepG2	liver
6	chr8:125801200-125803000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:125801400-125802600	Weak transcription	HMEC	breast
8	chr8:125801600-125803600	Enhancers	NHDF-Ad	bronchial
9	chr8:125801600-125803800	Enhancers	Primary hematopoietic stem cells	blood
10	chr8:125801800-125802600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr8:125801800-125802600	Enhancers	Right Atrium	heart
12	chr8:125801800-125802600	Enhancers	Spleen	Spleen
13	chr8:125801800-125803000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:125801800-125803200	Enhancers	K562	blood
15	chr8:125801800-125803400	Enhancers	Fetal Muscle Leg	muscle
16	chr8:125801800-125803600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:125801800-125803600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr8:125801800-125804000	Enhancers	Primary B cells from peripheral blood	blood
19	chr8:125802000-125802600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:125802000-125802600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:125802000-125802600	Enhancers	Fetal Stomach	stomach
22	chr8:125802000-125802600	Enhancers	Ovary	ovary
23	chr8:125802000-125802800	Enhancers	Fetal Thymus	thymus
24	chr8:125802000-125803200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:125802000-125803200	Enhancers	Fetal Lung	lung
26	chr8:125802000-125803200	Enhancers	Placenta	Placenta
27	chr8:125802000-125803600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:125802200-125802600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr8:125802200-125802600	Active TSS	Fetal Kidney	kidney
30	chr8:125802200-125802600	Enhancers	GM12878-XiMat	blood
31	chr8:125802200-125802800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:125802200-125802800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:125802200-125802800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:125802200-125802800	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr8:125802200-125802800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:125802200-125802800	Enhancers	NHLF	lung
37	chr8:125802200-125803000	Enhancers	Primary T cells from cord blood	blood
38	chr8:125802200-125803200	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr8:125802200-125803200	Enhancers	Brain Hippocampus Middle	brain
40	chr8:125802200-125803400	Enhancers	Osteobl	bone
41	chr8:125802200-125810800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr8:125802400-125802600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:125802400-125802600	Enhancers	Adipose Nuclei	Adipose
44	chr8:125802400-125802600	Flanking Active TSS	Brain Substantia Nigra	brain
45	chr8:125802400-125802600	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr8:125802400-125802800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:125802400-125802800	Enhancers	Thymus	Thymus
48	chr8:125802400-125803400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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