Variant report

Variant	rs73347087
Chromosome Location	chr8:125810587-125810588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125807877..125814693-chr8:125825913..125830602,6	K562	blood:
2	chr8:125808427..125810634-chr8:125852505..125855502,2	MCF-7	breast:
3	chr8:125808487..125810881-chr8:125820465..125822583,2	MCF-7	breast:
4	chr8:125687986..125690469-chr8:125810127..125812485,2	K562	blood:

Variant related genes	Relation type
ENSG00000255491	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10100875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103527	1.00[AFR][1000 genomes]
rs28507479	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57470157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59305035	0.97[AFR][1000 genomes]
rs59782834	0.97[AFR][1000 genomes]
rs60050058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73330458	0.95[AFR][1000 genomes]
rs73330462	0.95[AFR][1000 genomes]
rs73330464	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125802200-125810800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:125803200-125811200	Weak transcription	Fetal Lung	lung
3	chr8:125803400-125815000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:125808200-125812400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:125808400-125811400	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:125808600-125812400	Enhancers	Brain Germinal Matrix	brain
7	chr8:125808800-125812200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr8:125809200-125810800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:125809200-125812200	Enhancers	Brain Cingulate Gyrus	brain
10	chr8:125809400-125810800	Enhancers	Spleen	Spleen
11	chr8:125809400-125813600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:125809600-125810600	Weak transcription	Brain Anterior Caudate	brain
13	chr8:125809600-125811000	Weak transcription	Lung	lung
14	chr8:125809600-125811400	Enhancers	Primary B cells from cord blood	blood
15	chr8:125809600-125814800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:125809800-125810800	Enhancers	HepG2	liver
17	chr8:125810200-125812200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:125810200-125812200	Enhancers	Brain Hippocampus Middle	brain
19	chr8:125810400-125811400	Enhancers	Fetal Muscle Leg	muscle
20	chr8:125810400-125811400	Enhancers	Left Ventricle	heart
21	chr8:125810400-125811400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr8:125810400-125811600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:125810400-125812000	Enhancers	Brain Angular Gyrus	brain
24	chr8:125810400-125812200	Enhancers	Brain Substantia Nigra	brain
25	chr8:125810400-125812400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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