Variant report

Variant	rs28507479
Chromosome Location	chr8:125798458-125798459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125796403..125800528-chr8:125801363..125805897,4	K562	blood:
2	chr8:125795816..125798581-chr8:125915709..125918279,2	MCF-7	breast:
3	chr8:125739556..125742116-chr8:125797086..125799076,3	MCF-7	breast:
4	chr8:125793171..125795033-chr8:125797268..125799182,2	K562	blood:
5	chr8:125796943..125799236-chr8:125835444..125838283,2	MCF-7	breast:
6	chr8:125796182..125798570-chr8:125820001..125822258,2	MCF-7	breast:
7	chr8:125792724..125795528-chr8:125796094..125800609,5	MCF-7	breast:
8	chr8:125798304..125800528-chr8:125800814..125804175,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10100875	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103527	0.86[AFR][1000 genomes]
rs57470157	1.00[AMR][1000 genomes]
rs59305035	0.88[AFR][1000 genomes]
rs59782834	0.88[AFR][1000 genomes]
rs60050058	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73330458	0.86[AFR][1000 genomes]
rs73330462	0.86[AFR][1000 genomes]
rs73330464	0.86[AFR][1000 genomes]
rs73347087	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125794000-125798800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:125794800-125800200	Weak transcription	HMEC	breast
3	chr8:125795200-125801000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:125795800-125802000	Weak transcription	Placenta	Placenta
5	chr8:125796000-125801600	Weak transcription	Primary B cells from cord blood	blood
6	chr8:125796400-125801800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr8:125797400-125801800	Weak transcription	Left Ventricle	heart
8	chr8:125797400-125801800	Weak transcription	Spleen	Spleen
9	chr8:125797400-125801800	Weak transcription	K562	blood
10	chr8:125797400-125802200	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:125797800-125800000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:125798200-125798800	Enhancers	HepG2	liver
13	chr8:125798400-125798600	Enhancers	Esophagus	oesophagus
14	chr8:125798400-125800000	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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