Variant report

Variant	rs60050058
Chromosome Location	chr8:125806556-125806557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10100875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103527	1.00[AFR][1000 genomes]
rs28507479	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57470157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59305035	0.97[AFR][1000 genomes]
rs59782834	0.97[AFR][1000 genomes]
rs73330458	0.95[AFR][1000 genomes]
rs73330462	0.95[AFR][1000 genomes]
rs73330464	0.95[AFR][1000 genomes]
rs73347087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125802200-125810800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:125802600-125809400	Weak transcription	Spleen	Spleen
3	chr8:125803200-125808800	Weak transcription	K562	blood
4	chr8:125803200-125811200	Weak transcription	Fetal Lung	lung
5	chr8:125803400-125808200	Weak transcription	HepG2	liver
6	chr8:125803400-125815000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:125803800-125806800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:125803800-125807200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr8:125803800-125807400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr8:125804000-125808400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:125806200-125806600	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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