Variant report

Variant	rs57470157
Chromosome Location	chr8:125819972-125819973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10100875	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103527	0.92[AFR][1000 genomes]
rs28507479	1.00[AMR][1000 genomes]
rs59305035	0.90[AFR][1000 genomes]
rs59782834	0.90[AFR][1000 genomes]
rs60050058	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73330458	0.87[AFR][1000 genomes]
rs73330462	0.87[AFR][1000 genomes]
rs73330464	0.87[AFR][1000 genomes]
rs73347087	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125811400-125820600	Weak transcription	Lung	lung
2	chr8:125813800-125822400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:125815600-125820200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:125815600-125820200	Weak transcription	Osteobl	bone
5	chr8:125815600-125821400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:125815800-125820000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:125815800-125820600	Weak transcription	Left Ventricle	heart
8	chr8:125816800-125820200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:125816800-125820600	Weak transcription	K562	blood
10	chr8:125819000-125822200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:125819400-125821200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr8:125819400-125822000	Enhancers	HSMMtube	muscle
13	chr8:125819800-125821600	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links