Variant report

Variant	rs10109096
Chromosome Location	chr8:118410081-118410082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10095593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096601	1.00[AMR][1000 genomes]
rs10100736	1.00[AMR][1000 genomes]
rs10104240	1.00[AMR][1000 genomes]
rs10105995	1.00[AMR][1000 genomes]
rs10107653	1.00[AMR][1000 genomes]
rs1489405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16889760	1.00[AMR][1000 genomes]
rs16889831	1.00[AMR][1000 genomes]
rs16889924	1.00[AMR][1000 genomes]
rs16892788	1.00[AMR][1000 genomes]
rs2171717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373245	1.00[AMR][1000 genomes]
rs28397875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439173	1.00[AMR][1000 genomes]
rs28442252	1.00[AMR][1000 genomes]
rs28492056	1.00[AMR][1000 genomes]
rs28552087	1.00[AMR][1000 genomes]
rs28583342	1.00[AMR][1000 genomes]
rs28612338	1.00[AMR][1000 genomes]
rs28664811	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28757759	1.00[AMR][1000 genomes]
rs57987063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321547	1.00[AMR][1000 genomes]
rs73321569	1.00[AMR][1000 genomes]
rs73321581	1.00[AMR][1000 genomes]
rs73321583	1.00[AMR][1000 genomes]
rs73323222	1.00[AMR][1000 genomes]
rs73325255	1.00[AMR][1000 genomes]
rs9656916	1.00[AMR][1000 genomes]
rs9656919	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831435	chr8:118266417-118466651	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv428525	chr8:118384428-118543349	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831436	chr8:118384463-118543297	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv972193	chr8:118399518-118413497	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118408000-118412600	Enhancers	NHEK	skin
2	chr8:118408400-118412600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:118409200-118412200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:118409600-118412400	Enhancers	NHDF-Ad	bronchial
5	chr8:118409800-118410800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:118409800-118410800	Enhancers	A549	lung
7	chr8:118409800-118412600	Enhancers	HMEC	breast
8	chr8:118409800-118412800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:118410000-118412600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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