Variant report

Variant	rs28492056
Chromosome Location	chr8:118494576-118494577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10095593	1.00[AMR][1000 genomes]
rs10096601	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100736	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104240	1.00[AMR][1000 genomes]
rs10105995	1.00[AMR][1000 genomes]
rs10107653	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109096	1.00[AMR][1000 genomes]
rs1489405	1.00[AMR][1000 genomes]
rs16889760	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16889831	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16889924	1.00[AMR][1000 genomes]
rs16889994	1.00[AMR][1000 genomes]
rs16892788	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2171717	1.00[AMR][1000 genomes]
rs28373245	1.00[AMR][1000 genomes]
rs28397875	1.00[AMR][1000 genomes]
rs28439173	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28442252	1.00[AMR][1000 genomes]
rs28552087	1.00[AMR][1000 genomes]
rs28583342	1.00[AMR][1000 genomes]
rs28612338	1.00[AMR][1000 genomes]
rs28664811	1.00[AMR][1000 genomes]
rs28665357	1.00[AMR][1000 genomes]
rs28757759	1.00[AMR][1000 genomes]
rs57987063	1.00[AMR][1000 genomes]
rs73310404	1.00[AMR][1000 genomes]
rs73323222	1.00[AMR][1000 genomes]
rs73325255	1.00[AMR][1000 genomes]
rs9656916	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428525	chr8:118384428-118543349	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831436	chr8:118384463-118543297	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118494000-118496800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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