Variant report

Variant	rs28664811
Chromosome Location	chr8:118428679-118428680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118421843..118423721-chr8:118427158..118429532,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10095593	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096601	1.00[AMR][1000 genomes]
rs10100736	1.00[AMR][1000 genomes]
rs10104240	1.00[AMR][1000 genomes]
rs10105995	1.00[AMR][1000 genomes]
rs10107653	1.00[AMR][1000 genomes]
rs10109096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1489405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16889760	1.00[AMR][1000 genomes]
rs16889831	1.00[AMR][1000 genomes]
rs16889924	1.00[AMR][1000 genomes]
rs16889994	1.00[AMR][1000 genomes]
rs16892788	1.00[AMR][1000 genomes]
rs2171717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373245	1.00[AMR][1000 genomes]
rs28397875	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439173	1.00[AMR][1000 genomes]
rs28442252	1.00[AMR][1000 genomes]
rs28492056	1.00[AMR][1000 genomes]
rs28552087	1.00[AMR][1000 genomes]
rs28583342	1.00[AMR][1000 genomes]
rs28612338	1.00[AMR][1000 genomes]
rs28665357	1.00[AMR][1000 genomes]
rs28757759	1.00[AMR][1000 genomes]
rs57987063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310404	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321547	1.00[AMR][1000 genomes]
rs73321569	1.00[AMR][1000 genomes]
rs73321581	1.00[AMR][1000 genomes]
rs73321583	1.00[AMR][1000 genomes]
rs73323222	1.00[AMR][1000 genomes]
rs73325255	1.00[AMR][1000 genomes]
rs9656916	1.00[AMR][1000 genomes]
rs9656919	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831435	chr8:118266417-118466651	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv428525	chr8:118384428-118543349	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831436	chr8:118384463-118543297	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118426800-118429600	Enhancers	NHDF-Ad	bronchial
2	chr8:118426800-118429800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:118426800-118431200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:118427000-118428800	Enhancers	Fetal Lung	lung
5	chr8:118427000-118429200	Enhancers	Osteobl	bone
6	chr8:118427200-118429200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:118427200-118429200	Enhancers	Adipose Nuclei	Adipose
8	chr8:118427200-118429400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:118427200-118429400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:118427200-118431000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:118427400-118430800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:118427600-118429200	Enhancers	NH-A	brain
13	chr8:118427600-118429400	Enhancers	HMEC	breast
14	chr8:118427600-118429600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:118427600-118429600	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:118427600-118429800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:118427800-118429400	Enhancers	HUVEC	blood vessel
18	chr8:118428000-118431000	Weak transcription	HSMMtube	muscle
19	chr8:118428000-118431200	Weak transcription	Aorta	Aorta
20	chr8:118428400-118428800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:118428400-118428800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr8:118428400-118429200	Enhancers	NHEK	skin
23	chr8:118428400-118429400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr8:118428400-118429400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:118428400-118429400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:118428600-118429000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr8:118428600-118429400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr8:118428600-118429800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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