Variant report

Variant	rs10110931
Chromosome Location	chr8:64091856-64091857
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10088859	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10092975	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10098087	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10098776	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10104382	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10112454	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16930250	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1897987	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28708489	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56175034	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58009465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6994169	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73686712	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73686715	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs892850	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9657033	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9792339	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890965	chr8:64006201-64104092	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv890966	chr8:64073650-64099240	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64082000-64092200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:64082000-64098800	Weak transcription	Esophagus	oesophagus
3	chr8:64082000-64099000	Weak transcription	Gastric	stomach
4	chr8:64082200-64092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:64082200-64098600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:64082200-64098600	Weak transcription	Lung	lung
7	chr8:64082400-64098800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:64082600-64098600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:64082600-64098600	Weak transcription	Colonic Mucosa	Colon
10	chr8:64082800-64098800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:64083000-64098600	Weak transcription	Fetal Kidney	kidney
12	chr8:64083400-64098600	Weak transcription	HSMMtube	muscle
13	chr8:64083400-64098800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:64083600-64092000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:64083600-64098600	Weak transcription	Fetal Brain Male	brain
16	chr8:64083600-64098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:64083600-64098800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:64084000-64092000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:64084000-64098800	Weak transcription	Brain Germinal Matrix	brain
20	chr8:64084200-64096200	Weak transcription	Brain Substantia Nigra	brain
21	chr8:64084200-64098600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:64084200-64098800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr8:64084200-64102200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:64084400-64094200	Weak transcription	Small Intestine	intestine
25	chr8:64084400-64097200	Weak transcription	NHLF	lung
26	chr8:64084400-64098600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:64084400-64098600	Weak transcription	Brain Anterior Caudate	brain
28	chr8:64084400-64098600	Weak transcription	Ovary	ovary
29	chr8:64084400-64098800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr8:64084400-64099000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:64085400-64094000	Weak transcription	NHEK	skin
32	chr8:64086000-64098600	Weak transcription	Spleen	Spleen
33	chr8:64086000-64099000	Weak transcription	Right Ventricle	heart
34	chr8:64086400-64099200	Weak transcription	Stomach Mucosa	stomach
35	chr8:64086600-64098800	Weak transcription	Fetal Brain Female	brain
36	chr8:64086600-64098800	Weak transcription	Pancreas	Pancrea
37	chr8:64086600-64099000	Weak transcription	Aorta	Aorta
38	chr8:64086600-64099200	Weak transcription	Psoas Muscle	Psoas
39	chr8:64086800-64099000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr8:64087200-64092000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr8:64087200-64095000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:64087200-64096400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:64087200-64098600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:64087200-64098600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr8:64087200-64098800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr8:64087400-64095200	Weak transcription	HepG2	liver
47	chr8:64087400-64098600	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:64087800-64092000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr8:64087800-64092000	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr8:64088000-64092200	Strong transcription	Fetal Intestine Large	intestine

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