Variant report

Variant	rs9792339
Chromosome Location	chr8:64137027-64137028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:64136235..64137800-chr8:64137831..64140005,2	MCF-7	breast:
2	chr8:64132912..64134470-chr8:64135423..64137505,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088859	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10092975	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098087	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10098776	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10104382	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110931	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10112454	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930250	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1897987	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28708489	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4074214	0.89[ASN][1000 genomes]
rs56175034	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58009465	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6991542	0.92[ASN][1000 genomes]
rs6994169	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7011915	0.92[ASN][1000 genomes]
rs73684829	0.89[ASN][1000 genomes]
rs73686712	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73686715	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892850	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9657033	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64119600-64138800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:64122600-64138600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr8:64123000-64138200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:64124400-64138800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:64126200-64138800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:64126400-64138400	Weak transcription	Dnd41	blood
7	chr8:64127800-64138800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:64127800-64138800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:64128200-64138400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:64128400-64139000	Weak transcription	Fetal Thymus	thymus
11	chr8:64132800-64139200	Weak transcription	Spleen	Spleen
12	chr8:64133400-64138000	Weak transcription	Adipose Nuclei	Adipose
13	chr8:64133400-64140000	Enhancers	HUVEC	blood vessel
14	chr8:64133600-64138800	Weak transcription	Small Intestine	intestine
15	chr8:64134000-64137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:64134000-64137600	Weak transcription	NHEK	skin
17	chr8:64134000-64138400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:64134000-64138600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:64134000-64138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:64134400-64138000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:64134600-64137600	Weak transcription	HMEC	breast
22	chr8:64134600-64139000	Weak transcription	HSMMtube	muscle
23	chr8:64135000-64138600	Weak transcription	NH-A	brain
24	chr8:64135400-64138200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr8:64135400-64138400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr8:64135400-64138800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr8:64135400-64139000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr8:64135400-64139200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:64135600-64138800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr8:64135600-64138800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:64135600-64139000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr8:64135800-64138200	Weak transcription	Osteobl	bone
33	chr8:64135800-64138400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr8:64135800-64138800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr8:64135800-64138800	Weak transcription	GM12878-XiMat	blood
36	chr8:64136600-64137200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:64136600-64138200	Weak transcription	HSMM	muscle
38	chr8:64136600-64138600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:64136800-64138200	Weak transcription	Muscle Satellite Cultured Cells	--

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