Variant report

Variant	rs10088859
Chromosome Location	chr8:64114563-64114564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:64106160..64109170-chr8:64112814..64116314,3	K562	blood:
2	chr8:64109221..64111336-chr8:64112891..64115469,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10092975	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10098087	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10098776	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10104382	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10108512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs10108613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs10110931	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10112454	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16930250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1836635	0.81[YRI][hapmap]
rs1897987	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28708489	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4074214	0.84[ASN][1000 genomes]
rs56175034	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58009465	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6991542	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6994169	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7011915	0.87[ASN][1000 genomes]
rs73684829	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73686712	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73686715	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs892850	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9657033	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9792339	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64100000-64118800	Weak transcription	Esophagus	oesophagus
2	chr8:64100600-64122200	Weak transcription	Fetal Kidney	kidney
3	chr8:64100600-64127000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:64101200-64117200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:64101600-64128000	Weak transcription	Colonic Mucosa	Colon
6	chr8:64101600-64136000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:64103400-64115800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:64103400-64119800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:64103400-64127400	Weak transcription	Thymus	Thymus
10	chr8:64103600-64115000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:64103600-64119800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr8:64103600-64120600	Weak transcription	Dnd41	blood
13	chr8:64103600-64121400	Weak transcription	Fetal Thymus	thymus
14	chr8:64103600-64122200	Weak transcription	Placenta	Placenta
15	chr8:64103600-64129800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:64104400-64124800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:64105200-64122400	Weak transcription	NHDF-Ad	bronchial
18	chr8:64105400-64122200	Weak transcription	K562	blood
19	chr8:64105600-64116400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:64105600-64116400	Weak transcription	Brain Substantia Nigra	brain
21	chr8:64105800-64119000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:64105800-64122200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:64106200-64115200	Weak transcription	Fetal Stomach	stomach
24	chr8:64107000-64127200	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:64107000-64132000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr8:64107400-64117200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr8:64107600-64116400	Weak transcription	Fetal Brain Female	brain
28	chr8:64108000-64114600	Weak transcription	Brain Anterior Caudate	brain
29	chr8:64108000-64116400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr8:64108600-64117000	Weak transcription	Right Atrium	heart
31	chr8:64108600-64117600	Weak transcription	Gastric	stomach
32	chr8:64108600-64122400	Weak transcription	HMEC	breast
33	chr8:64108600-64132000	Weak transcription	Lung	lung
34	chr8:64108600-64134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr8:64108800-64122200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:64109000-64132000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:64109400-64114600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:64109400-64115000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:64109800-64116800	Weak transcription	Ovary	ovary
40	chr8:64110800-64119400	Weak transcription	HUVEC	blood vessel
41	chr8:64111000-64119800	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr8:64111200-64116800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr8:64111800-64114600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr8:64111800-64114600	Enhancers	Small Intestine	intestine
45	chr8:64111800-64114800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr8:64111800-64115000	Enhancers	Liver	Liver
47	chr8:64111800-64115600	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr8:64112000-64115000	Enhancers	Adipose Nuclei	Adipose
49	chr8:64112200-64119200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr8:64112600-64114600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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