Variant report
| Variant | rs4074214 |
|---|---|
| Chromosome Location | chr8:64182602-64182603 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:64180743..64182661-chr8:64185697..64187507,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10088859 | 0.84[ASN][1000 genomes] |
| rs10092975 | 0.89[ASN][1000 genomes] |
| rs10095945 | 0.80[ASN][1000 genomes] |
| rs10098087 | 0.87[ASN][1000 genomes] |
| rs10098776 | 0.87[ASN][1000 genomes] |
| rs10102076 | 0.86[ASN][1000 genomes] |
| rs10104382 | 0.89[ASN][1000 genomes] |
| rs10110180 | 0.86[ASN][1000 genomes] |
| rs10112454 | 0.89[ASN][1000 genomes] |
| rs16930250 | 0.83[ASN][1000 genomes] |
| rs1836635 | 1.00[EUR][1000 genomes] |
| rs1897987 | 0.89[ASN][1000 genomes] |
| rs28546639 | 0.80[ASN][1000 genomes] |
| rs28685228 | 1.00[EUR][1000 genomes] |
| rs28701001 | 1.00[EUR][1000 genomes] |
| rs28708489 | 0.88[ASN][1000 genomes] |
| rs3924926 | 0.85[ASN][1000 genomes] |
| rs56175034 | 0.89[ASN][1000 genomes] |
| rs58009465 | 0.82[ASN][1000 genomes] |
| rs6991542 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6994169 | 0.84[ASN][1000 genomes] |
| rs7011915 | 0.97[ASN][1000 genomes] |
| rs73684829 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73686712 | 0.89[ASN][1000 genomes] |
| rs73686715 | 0.89[ASN][1000 genomes] |
| rs7463230 | 0.86[ASN][1000 genomes] |
| rs892850 | 0.89[ASN][1000 genomes] |
| rs9657033 | 0.83[ASN][1000 genomes] |
| rs9792339 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831342 | chr8:64084331-64294941 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv890967 | chr8:64107847-64454446 | Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | esv1816645 | chr8:64161544-64184282 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:64178800-64192800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr8:64179200-64183000 | Weak transcription | HSMM | muscle |
| 3 | chr8:64182400-64183600 | Enhancers | HSMMtube | muscle |
