Variant report

Variant	rs10098776
Chromosome Location	chr8:64135084-64135085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:64134507..64135460-chr8:64213390..64213927,3	K562	blood:
2	chr8:64079083..64082581-chr8:64133450..64136744,4	K562	blood:
3	chr8:64134842..64135467-chr8:64212940..64213562,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270673	Chromatin interaction
ENSG00000185728	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10088859	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10092975	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10098087	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10104382	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10108512	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs10108613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10110931	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10112454	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16930250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1836635	0.81[YRI][hapmap]
rs1897987	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28708489	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4074214	0.87[ASN][1000 genomes]
rs56175034	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58009465	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6991542	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6994169	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7011915	0.90[ASN][1000 genomes]
rs73684829	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73686712	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73686715	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs892850	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9657033	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9792339	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64101600-64136000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:64119600-64138800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:64122600-64138600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:64122800-64135200	Weak transcription	Fetal Kidney	kidney
5	chr8:64123000-64138200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:64124400-64138800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:64124600-64135400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:64126200-64138800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:64126400-64138400	Weak transcription	Dnd41	blood
10	chr8:64126600-64135200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr8:64127800-64138800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:64127800-64138800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:64128200-64138400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:64128400-64139000	Weak transcription	Fetal Thymus	thymus
15	chr8:64131400-64136000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:64131800-64135200	Enhancers	Hela-S3	cervix
17	chr8:64132800-64139200	Weak transcription	Spleen	Spleen
18	chr8:64133400-64138000	Weak transcription	Adipose Nuclei	Adipose
19	chr8:64133400-64140000	Enhancers	HUVEC	blood vessel
20	chr8:64133600-64135800	Enhancers	Osteobl	bone
21	chr8:64133600-64136600	Enhancers	A549	lung
22	chr8:64133600-64136600	Enhancers	HSMM	muscle
23	chr8:64133600-64138800	Weak transcription	Small Intestine	intestine
24	chr8:64133800-64135400	Enhancers	NHDF-Ad	bronchial
25	chr8:64133800-64135800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:64133800-64136000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:64134000-64136800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:64134000-64137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:64134000-64137600	Weak transcription	NHEK	skin
30	chr8:64134000-64138400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:64134000-64138600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr8:64134000-64138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:64134400-64138000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:64134600-64135400	Weak transcription	NHLF	lung
35	chr8:64134600-64135600	Enhancers	Brain Hippocampus Middle	brain
36	chr8:64134600-64135600	Weak transcription	Right Atrium	heart
37	chr8:64134600-64137600	Weak transcription	HMEC	breast
38	chr8:64134600-64139000	Weak transcription	HSMMtube	muscle
39	chr8:64134800-64135200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:64134800-64135200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:64134800-64135400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:64134800-64136400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr8:64135000-64135200	Enhancers	Primary B cells from cord blood	blood
44	chr8:64135000-64135200	Enhancers	Primary T cells from cord blood	blood
45	chr8:64135000-64135200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:64135000-64135200	Enhancers	Liver	Liver
47	chr8:64135000-64135400	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr8:64135000-64135400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:64135000-64135400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr8:64135000-64135400	Enhancers	Primary T helper cells PMA-I stimulated	--

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