Variant report

Variant	rs9657033
Chromosome Location	chr8:64079184-64079185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr8:64079061-64079236	K562	blood:	n/a	n/a
2	EBF1	chr8:64078844-64079233	GM12878	blood:	n/a	chr8:64078943-64078954 chr8:64079011-64079022
3	POLR2A	chr8:64078992-64081970	GM12878	blood:	n/a	n/a
4	MAX	chr8:64079030-64079250	K562	blood:	n/a	n/a
5	POLR2A	chr8:64078970-64081416	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:64078480..64080986-chr8:64100261..64102698,2	MCF-7	breast:
2	chr8:64077771..64079470-chr8:64079475..64082429,2	MCF-7	breast:

Variant related genes	Relation type
YTHDF3	TF binding region
ENSG00000270673	Chromatin interaction
ENSG00000185728	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088859	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10092975	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10098087	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10098776	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10104382	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10110931	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10112454	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16930250	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1897987	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28708489	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4074214	0.83[ASN][1000 genomes]
rs56175034	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58009465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6991542	0.86[ASN][1000 genomes]
rs6994169	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7011915	0.86[ASN][1000 genomes]
rs73684829	0.83[ASN][1000 genomes]
rs73686712	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73686715	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs892850	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9792339	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465701	chr8:63951237-64080486	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv611448	chr8:63951237-64080486	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv890965	chr8:64006201-64104092	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv890966	chr8:64073650-64099240	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64072200-64079200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr8:64076400-64079400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:64076400-64079600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:64078200-64079200	Enhancers	K562	blood
5	chr8:64078200-64079800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr8:64078400-64079400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:64078400-64079800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:64078400-64079800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:64078400-64079800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr8:64078400-64080200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr8:64078600-64079200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:64078600-64079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:64078600-64079600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr8:64078800-64079200	Weak transcription	HepG2	liver
15	chr8:64078800-64079600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr8:64078800-64079600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:64078800-64079800	Enhancers	Primary hematopoietic stem cells	blood
18	chr8:64078800-64079800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr8:64078800-64080400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:64079000-64079200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:64079000-64079200	Active TSS	GM12878-XiMat	blood
22	chr8:64079000-64079600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:64079000-64079600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:64079000-64079600	Enhancers	NHLF	lung
25	chr8:64079000-64079800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr8:64079000-64079800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr8:64079000-64080200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:64079000-64080200	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links