Variant report

Variant	rs10115778
Chromosome Location	chr9:110643191-110643192
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10816583	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10979080	0.95[ASN][1000 genomes]
rs10979081	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979086	0.83[ASN][1000 genomes]
rs12552179	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13298965	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4509400	0.83[ASN][1000 genomes]
rs7021395	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7035211	0.80[AMR][1000 genomes]
rs7036874	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7037236	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7045461	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110635800-110656800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110641200-110645400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr9:110641400-110645400	Weak transcription	Primary B cells from cord blood	blood
4	chr9:110641800-110644000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr9:110641800-110644400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr9:110642000-110643200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:110642000-110643200	Enhancers	Fetal Stomach	stomach
8	chr9:110642200-110643200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:110642200-110643200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:110642200-110643400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:110642200-110643400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:110642200-110643400	Enhancers	Fetal Muscle Leg	muscle
13	chr9:110642200-110643400	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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