Variant report

Variant	rs10816583
Chromosome Location	chr9:110648305-110648306
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10115778	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10979080	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10979081	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10979086	0.87[ASN][1000 genomes]
rs12552179	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13298965	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4509400	0.87[ASN][1000 genomes]
rs7021395	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7035211	0.83[ASN][1000 genomes]
rs7036874	0.89[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7037236	0.90[ASN][1000 genomes]
rs7045461	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs944472	0.85[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110635800-110656800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110644400-110651000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:110644800-110658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:110646200-110651000	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:110646400-110651000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:110646600-110649000	Weak transcription	Adipose Nuclei	Adipose
7	chr9:110646800-110652600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:110647200-110649000	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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