Variant report

Variant	rs10979081
Chromosome Location	chr9:110644352-110644353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10115778	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816583	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10979080	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979086	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12552179	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13298965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4509400	0.83[ASN][1000 genomes]
rs7021395	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7036874	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7037236	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7045461	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs944472	0.80[CEU][hapmap];0.92[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10979081	OR13C2	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110635800-110656800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110641200-110645400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr9:110641400-110645400	Weak transcription	Primary B cells from cord blood	blood
4	chr9:110641800-110644400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:110643400-110646000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:110643800-110644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:110644000-110645600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:110644200-110644400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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