Variant report

Variant	rs13298965
Chromosome Location	chr9:110643548-110643549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10115778	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816583	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10979080	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979086	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12552179	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4509400	0.83[ASN][1000 genomes]
rs7021395	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7036874	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7037236	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7045461	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110635800-110656800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110641200-110645400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr9:110641400-110645400	Weak transcription	Primary B cells from cord blood	blood
4	chr9:110641800-110644000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr9:110641800-110644400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr9:110643200-110644200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:110643400-110644000	Weak transcription	Hela-S3	cervix
8	chr9:110643400-110646000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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